Variant report

Variant	rs13432833
Chromosome Location	chr2:76484546-76484547
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10164571	0.93[AFR][1000 genomes]
rs10176082	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12477363	0.87[AFR][1000 genomes]
rs13390310	0.93[AFR][1000 genomes]
rs13403555	0.89[AFR][1000 genomes]
rs13410264	0.96[AFR][1000 genomes]
rs1526651	0.87[AFR][1000 genomes]
rs1526652	0.87[AFR][1000 genomes]
rs1526653	0.87[AFR][1000 genomes]
rs1980323	0.87[AFR][1000 genomes]
rs28572048	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28575581	0.86[AFR][1000 genomes]
rs28578605	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28626126	1.00[AFR][1000 genomes]
rs6738864	0.87[AFR][1000 genomes]
rs6756912	1.00[AMR][1000 genomes]
rs73940107	1.00[AFR][1000 genomes]
rs73940108	0.96[AFR][1000 genomes]
rs73940109	0.96[AFR][1000 genomes]
rs73940121	0.93[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv874311	chr2:76389455-76492999	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv874312	chr2:76430941-76500077	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:76476600-76484800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr2:76483600-76486200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr2:76484200-76491600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr2:76484400-76485000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links