Variant report

Variant	rs13403927
Chromosome Location	chr2:114759318-114759319
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10173854	1.00[AFR][1000 genomes]
rs10208093	1.00[AFR][1000 genomes]
rs10209655	1.00[AFR][1000 genomes]
rs13407224	1.00[AFR][1000 genomes]
rs13422866	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv874904	chr2:114751691-115605062	Active TSS Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:114736200-114761000	Weak transcription	HSMMtube	muscle
2	chr2:114741200-114761000	Weak transcription	HSMM	muscle
3	chr2:114755600-114768000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr2:114758400-114760400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr2:114758800-114759600	Weak transcription	Brain Germinal Matrix	brain
6	chr2:114758800-114760800	Enhancers	Cortex derived primary cultured neurospheres	brain
7	chr2:114758800-114762200	Weak transcription	HepG2	liver
8	chr2:114759200-114759600	Enhancers	Brain Cingulate Gyrus	brain
9	chr2:114759200-114760400	Enhancers	Fetal Brain Male	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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