Variant report

Variant	rs13407959
Chromosome Location	chr2:182123077-182123078
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10173932	0.94[EUR][1000 genomes]
rs10186141	0.94[EUR][1000 genomes]
rs10193025	0.88[EUR][1000 genomes]
rs10193052	0.88[EUR][1000 genomes]
rs10200804	0.82[EUR][1000 genomes]
rs12328546	0.88[EUR][1000 genomes]
rs13413665	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs13431332	0.88[EUR][1000 genomes]
rs6714753	1.00[EUR][1000 genomes]
rs73974835	0.88[EUR][1000 genomes]
rs73974836	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1005870	chr2:181968637-182921439	Enhancers Strong transcription Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	nsv536063	chr2:181968637-182921439	Enhancers Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
3	nsv1002647	chr2:182078521-182392273	Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
4	nsv536064	chr2:182078521-182392273	Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:182107400-182127600	Weak transcription	Primary T cells fromperipheralblood	blood
2	chr2:182117400-182126400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
3	chr2:182117800-182124800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
4	chr2:182117800-182125600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
5	chr2:182117800-182126000	Weak transcription	Primary T cells from cord blood	blood
6	chr2:182117800-182140200	Weak transcription	Dnd41	blood
7	chr2:182117800-182140600	Weak transcription	Fetal Thymus	thymus
8	chr2:182118000-182128800	Weak transcription	Primary T helper cells fromperipheralblood	blood
9	chr2:182118400-182127600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
10	chr2:182122400-182123200	Enhancers	HSMMtube	muscle
11	chr2:182122800-182123400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr2:182123000-182124200	Enhancers	NHDF-Ad	bronchial

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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