Variant report

Variant	rs10173932
Chromosome Location	chr2:182131011-182131012
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10186141	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10193025	0.81[EUR][1000 genomes]
rs10193052	0.81[EUR][1000 genomes]
rs10200804	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12328546	0.81[EUR][1000 genomes]
rs13407959	0.94[EUR][1000 genomes]
rs13413665	0.94[EUR][1000 genomes]
rs13431332	0.81[EUR][1000 genomes]
rs55792567	0.81[EUR][1000 genomes]
rs56193143	0.81[EUR][1000 genomes]
rs56298450	1.00[AMR][1000 genomes]
rs56397732	0.81[EUR][1000 genomes]
rs6714753	0.94[EUR][1000 genomes]
rs6742878	1.00[AMR][1000 genomes]
rs73974835	0.81[EUR][1000 genomes]
rs73974836	0.81[EUR][1000 genomes]
rs7578322	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1005870	chr2:181968637-182921439	Enhancers Strong transcription Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	nsv536063	chr2:181968637-182921439	Enhancers Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
3	nsv1002647	chr2:182078521-182392273	Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
4	nsv536064	chr2:182078521-182392273	Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:182117800-182140200	Weak transcription	Dnd41	blood
2	chr2:182117800-182140600	Weak transcription	Fetal Thymus	thymus
3	chr2:182128000-182133400	Weak transcription	HSMMtube	muscle
4	chr2:182128000-182134600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
5	chr2:182128000-182135000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
6	chr2:182128400-182139800	Weak transcription	Primary T cells from cord blood	blood
7	chr2:182128400-182139800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
8	chr2:182129000-182135000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
9	chr2:182129000-182135400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
10	chr2:182129000-182135400	Weak transcription	Primary T helper cells PMA-I stimulated	--
11	chr2:182129200-182135400	Weak transcription	Primary T helper cells fromperipheralblood	blood
12	chr2:182130000-182131600	Enhancers	ES-I3 Cell Line	embryonic stem cell
13	chr2:182130600-182131400	Enhancers	iPS-20b Cell Line	embryonic stem cell
14	chr2:182131000-182131600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
15	chr2:182131000-182131800	Enhancers	HUES48 Cell Line	embryonic stem cell
16	chr2:182131000-182131800	Enhancers	iPS-18 Cell Line	embryonic stem cell
17	chr2:182131000-182131800	Enhancers	Fetal Brain Male	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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