Variant report

Variant	rs13413665
Chromosome Location	chr2:182127663-182127664
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10173932	0.94[EUR][1000 genomes]
rs10186141	0.94[EUR][1000 genomes]
rs10193025	0.88[EUR][1000 genomes]
rs10193052	0.88[EUR][1000 genomes]
rs10200804	0.82[EUR][1000 genomes]
rs12328546	0.88[EUR][1000 genomes]
rs13407959	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs13414167	0.83[AMR][1000 genomes]
rs13431332	0.88[EUR][1000 genomes]
rs6714753	1.00[EUR][1000 genomes]
rs73974835	0.88[EUR][1000 genomes]
rs73974836	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1005870	chr2:181968637-182921439	Enhancers Strong transcription Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	nsv536063	chr2:181968637-182921439	Enhancers Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
3	nsv1002647	chr2:182078521-182392273	Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
4	nsv536064	chr2:182078521-182392273	Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:182117800-182140200	Weak transcription	Dnd41	blood
2	chr2:182117800-182140600	Weak transcription	Fetal Thymus	thymus
3	chr2:182118000-182128800	Weak transcription	Primary T helper cells fromperipheralblood	blood
4	chr2:182125600-182128000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
5	chr2:182126000-182128400	Enhancers	Primary T cells from cord blood	blood
6	chr2:182126200-182128400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
7	chr2:182126200-182129000	Enhancers	Primary T helper cells PMA-I stimulated	--
8	chr2:182126400-182128400	Enhancers	Primary T killer memory cells from peripheral blood	blood
9	chr2:182126400-182129200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr2:182126800-182127800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
11	chr2:182127600-182127800	Enhancers	Primary T cells fromperipheralblood	blood
12	chr2:182127600-182128000	Enhancers	Primary hematopoietic stem cells short term culture	blood
13	chr2:182127600-182128000	Enhancers	Primary T helper naive cells from peripheral blood	blood
14	chr2:182127600-182128000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr2:182127600-182128000	Enhancers	Small Intestine	intestine
16	chr2:182127600-182128000	Enhancers	HSMMtube	muscle
17	chr2:182127600-182129000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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