Variant report

Variant	rs13411677
Chromosome Location	chr2:190413016-190413017
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:190411762..190417364-chr2:190417405..190425188,8	MCF-7	breast:
2	chr2:190412312..190414434-chr2:190416137..190418653,2	K562	blood:
3	chr2:190406738..190410558-chr2:190411483..190414461,4	MCF-7	breast:

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10195345	1.00[YRI][hapmap];0.92[AFR][1000 genomes]
rs13388478	0.91[AFR][1000 genomes]
rs13398454	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs13399776	0.91[AFR][1000 genomes]
rs13404407	1.00[YRI][hapmap];0.85[AFR][1000 genomes]
rs13419514	0.92[AFR][1000 genomes]
rs13419629	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs13420166	1.00[AFR][1000 genomes]
rs13420264	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs13421111	0.83[AFR][1000 genomes]
rs13431938	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs28435467	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533029	chr2:189812229-190554339	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv875615	chr2:190215527-190444392	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:190407000-190413400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr2:190407400-190424200	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr2:190408000-190413400	Weak transcription	HepG2	liver
4	chr2:190408000-190416600	Weak transcription	Duodenum Mucosa	Duodenum
5	chr2:190408200-190416600	Weak transcription	Rectal Mucosa Donor 31	rectum
6	chr2:190408200-190420600	Weak transcription	Small Intestine	intestine
7	chr2:190408600-190413800	Weak transcription	Right Atrium	heart
8	chr2:190408800-190413800	Weak transcription	Stomach Mucosa	stomach
9	chr2:190408800-190416400	Weak transcription	Fetal Intestine Large	intestine
10	chr2:190408800-190422400	Weak transcription	Primary neutrophils fromperipheralblood	blood
11	chr2:190410000-190414000	Weak transcription	Psoas Muscle	Psoas
12	chr2:190410600-190413400	Weak transcription	Skeletal Muscle Male	skeletal muscle
13	chr2:190410600-190413600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr2:190410600-190413800	Weak transcription	Osteobl	bone
15	chr2:190410600-190416400	Weak transcription	Aorta	Aorta
16	chr2:190410800-190413600	Weak transcription	NHDF-Ad	bronchial
17	chr2:190411000-190413600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr2:190411000-190413800	Weak transcription	Adipose Nuclei	Adipose
19	chr2:190411000-190413800	Weak transcription	Ovary	ovary
20	chr2:190411000-190414000	Weak transcription	Rectal Smooth Muscle	rectum
21	chr2:190411200-190414000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr2:190411200-190420600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
23	chr2:190411400-190413400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr2:190411400-190413800	Weak transcription	Colon Smooth Muscle	Colon
25	chr2:190411400-190413800	Weak transcription	Stomach Smooth Muscle	stomach
26	chr2:190412600-190413800	Enhancers	HSMMtube	muscle
27	chr2:190412800-190413800	Enhancers	HSMM	muscle
28	chr2:190412800-190415200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr2:190413000-190413200	Enhancers	Fetal Lung	lung
30	chr2:190413000-190413400	Weak transcription	Fetal Muscle Leg	muscle
31	chr2:190413000-190413800	Weak transcription	Skeletal Muscle Female	skeletal muscle
32	chr2:190413000-190413800	Enhancers	A549	lung
33	chr2:190413000-190414800	Enhancers	Muscle Satellite Cultured Cells	--
34	chr2:190413000-190424200	Weak transcription	Fetal Heart	heart

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