Variant report

Variant	rs13399776
Chromosome Location	chr2:190459555-190459556
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10168297	0.82[AFR][1000 genomes]
rs10195345	0.84[AFR][1000 genomes]
rs10202658	0.82[AFR][1000 genomes]
rs10202808	0.82[AFR][1000 genomes]
rs10206357	0.82[AFR][1000 genomes]
rs13388478	1.00[AFR][1000 genomes]
rs13398454	0.91[AFR][1000 genomes]
rs13411677	0.91[AFR][1000 genomes]
rs13419514	0.84[AFR][1000 genomes]
rs13419629	0.91[AFR][1000 genomes]
rs13420166	0.91[AFR][1000 genomes]
rs13420264	0.91[AFR][1000 genomes]
rs13421111	0.91[AFR][1000 genomes]
rs13426218	0.81[AFR][1000 genomes]
rs13431938	0.91[AFR][1000 genomes]
rs28435467	0.91[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533029	chr2:189812229-190554339	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	40 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:190455000-190461400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
2	chr2:190456000-190461000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
3	chr2:190456200-190459800	Enhancers	Primary T helper cells fromperipheralblood	blood
4	chr2:190458400-190462600	Weak transcription	Aorta	Aorta
5	chr2:190458600-190460200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
6	chr2:190458800-190460200	Weak transcription	Primary T cells from cord blood	blood
7	chr2:190458800-190460400	Weak transcription	Primary T helper cells PMA-I stimulated	--

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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