Variant report

Variant	rs13421111
Chromosome Location	chr2:190491536-190491537
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:190405839..190407913-chr2:190491437..190493311,2	MCF-7	breast:
2	chr2:190445381..190447418-chr2:190489574..190492312,2	K562	blood:

Variant related genes	Relation type
ENSG00000138449	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs13388478	0.91[AFR][1000 genomes]
rs13398454	0.83[AFR][1000 genomes]
rs13399776	0.91[AFR][1000 genomes]
rs13411677	0.83[AFR][1000 genomes]
rs13419629	0.83[AFR][1000 genomes]
rs13420166	0.83[AFR][1000 genomes]
rs13420264	0.83[AFR][1000 genomes]
rs13429318	1.00[YRI][hapmap]
rs13431938	0.83[AFR][1000 genomes]
rs28435467	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533029	chr2:189812229-190554339	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	40 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:190479000-190503800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr2:190484400-190493800	Weak transcription	A549	lung
3	chr2:190484600-190494400	Weak transcription	HUVEC	blood vessel
4	chr2:190486200-190494400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr2:190487400-190494000	Weak transcription	Stomach Mucosa	stomach
6	chr2:190488200-190494000	Weak transcription	Ovary	ovary
7	chr2:190489400-190491800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
8	chr2:190489600-190494200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr2:190489600-190494200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
10	chr2:190489800-190493600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr2:190489800-190494200	Weak transcription	HUES6 Cell Line	embryonic stem cell
12	chr2:190490200-190494000	Weak transcription	Hela-S3	cervix
13	chr2:190490400-190491800	Enhancers	Primary T helper cells PMA-I stimulated	--
14	chr2:190490400-190492000	Enhancers	Primary T helper naive cells from peripheral blood	blood
15	chr2:190490600-190491600	Enhancers	Primary T helper cells fromperipheralblood	blood
16	chr2:190490600-190491800	Enhancers	Primary T cells fromperipheralblood	blood
17	chr2:190490600-190491800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
18	chr2:190490800-190491600	Enhancers	Primary T cells from cord blood	blood
19	chr2:190490800-190491600	Enhancers	Primary T killer memory cells from peripheral blood	blood
20	chr2:190490800-190493800	Weak transcription	K562	blood
21	chr2:190491000-190493800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

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