Variant report

Variant	rs13412005
Chromosome Location	chr2:63741564-63741565
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10084330	1.00[AMR][1000 genomes]
rs12328126	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13386582	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13391009	1.00[AMR][1000 genomes]
rs13392388	1.00[AMR][1000 genomes]
rs13410065	1.00[AMR][1000 genomes]
rs13425413	1.00[AMR][1000 genomes]
rs13431016	1.00[AMR][1000 genomes]
rs9989753	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3417336	chr2:62957866-63749654	Strong transcription Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	esv1800788	chr2:63473443-63900292	ZNF genes & repeats Enhancers Weak transcription Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:63734000-63742200	Weak transcription	Primary T helper cells PMA-I stimulated	--
2	chr2:63739800-63741800	Weak transcription	Brain Angular Gyrus	brain
3	chr2:63741000-63742000	Enhancers	Brain Germinal Matrix	brain
4	chr2:63741400-63741600	ZNF genes & repeats	Aorta	Aorta

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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