Variant report

Variant	rs13386582
Chromosome Location	chr2:63887227-63887228
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:63886236..63889221-chr2:63894013..63896444,2	K562	blood:
2	chr2:63885934..63888803-chr2:63891795..63894476,2	MCF-7	breast:

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10084330	1.00[AMR][1000 genomes]
rs10175439	1.00[AMR][1000 genomes]
rs10194684	1.00[AMR][1000 genomes]
rs10211030	1.00[AMR][1000 genomes]
rs12328126	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13391009	1.00[AMR][1000 genomes]
rs13392388	1.00[AMR][1000 genomes]
rs13405024	1.00[AMR][1000 genomes]
rs13407873	1.00[AMR][1000 genomes]
rs13410065	1.00[AMR][1000 genomes]
rs13412005	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13424234	1.00[AMR][1000 genomes]
rs13425413	1.00[AMR][1000 genomes]
rs13427962	1.00[AMR][1000 genomes]
rs13431016	1.00[AMR][1000 genomes]
rs9989753	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1800788	chr2:63473443-63900292	ZNF genes & repeats Enhancers Weak transcription Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	esv1792289	chr2:63812148-63900292	Weak transcription Strong transcription Genic enhancers Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:63882400-63887400	Weak transcription	NHEK	skin
2	chr2:63882400-63887600	Weak transcription	HMEC	breast
3	chr2:63882600-63890400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr2:63883600-63900400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr2:63884200-63887400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr2:63884800-63888200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr2:63885000-63889400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr2:63885200-63888000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr2:63885400-63890800	Enhancers	Osteobl	bone
10	chr2:63885600-63888000	Enhancers	Liver	Liver
11	chr2:63885800-63891000	Enhancers	NHDF-Ad	bronchial
12	chr2:63886000-63888800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr2:63886200-63887400	Weak transcription	Muscle Satellite Cultured Cells	--
14	chr2:63886400-63888200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr2:63886400-63888400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr2:63886800-63889600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
17	chr2:63886800-63890800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr2:63887000-63888600	Enhancers	iPS-15b Cell Line	embryonic stem cell
19	chr2:63887200-63888400	Enhancers	HUES64 Cell Line	embryonic stem cell
20	chr2:63887200-63890600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links