Variant report

Variant	rs10211030
Chromosome Location	chr2:64028991-64028992
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10170601	1.00[AMR][1000 genomes]
rs10175439	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10178275	1.00[AMR][1000 genomes]
rs10194235	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10194684	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10197962	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12328126	1.00[AMR][1000 genomes]
rs13386582	1.00[AMR][1000 genomes]
rs13387854	1.00[AMR][1000 genomes]
rs13391009	1.00[AMR][1000 genomes]
rs13392388	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13396651	1.00[AMR][1000 genomes]
rs13405024	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13407873	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13410065	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13418689	1.00[AMR][1000 genomes]
rs13422518	1.00[AMR][1000 genomes]
rs13424234	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13425413	1.00[AMR][1000 genomes]
rs13426789	1.00[AMR][1000 genomes]
rs13427671	1.00[AMR][1000 genomes]
rs13427962	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13429652	1.00[AMR][1000 genomes]
rs13431016	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13431823	1.00[AMR][1000 genomes]
rs9989753	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834242	chr2:63891249-64045617	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Genic enhancers Strong transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1013375	chr2:63969820-64231550	ZNF genes & repeats Flanking Active TSS Weak transcription Strong transcription Genic enhancers Enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:64019000-64029000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr2:64020400-64032000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr2:64023600-64032800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr2:64028600-64029000	ZNF genes & repeats	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr2:64028800-64029200	ZNF genes & repeats	Adipose Nuclei	Adipose
6	chr2:64028800-64029200	ZNF genes & repeats	Liver	Liver

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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