Variant report

Variant	rs12328126
Chromosome Location	chr2:63881116-63881117
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10084330	1.00[AMR][1000 genomes]
rs10175439	1.00[AMR][1000 genomes]
rs10194684	1.00[AMR][1000 genomes]
rs10211030	1.00[AMR][1000 genomes]
rs13386582	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13391009	1.00[AMR][1000 genomes]
rs13392388	1.00[AMR][1000 genomes]
rs13405024	1.00[AMR][1000 genomes]
rs13407873	1.00[AMR][1000 genomes]
rs13410065	1.00[AMR][1000 genomes]
rs13412005	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13424234	1.00[AMR][1000 genomes]
rs13425413	1.00[AMR][1000 genomes]
rs13427962	1.00[AMR][1000 genomes]
rs13431016	1.00[AMR][1000 genomes]
rs9989753	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1800788	chr2:63473443-63900292	ZNF genes & repeats Enhancers Weak transcription Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	esv1792289	chr2:63812148-63900292	Weak transcription Strong transcription Genic enhancers Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:63878200-63882000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr2:63880600-63881400	Weak transcription	Liver	Liver
3	chr2:63880800-63882400	ZNF genes & repeats	Aorta	Aorta
4	chr2:63881000-63886800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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