Variant report

Variant	rs13413244
Chromosome Location	chr2:178223932-178223933
allele	A/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:178221876..178224695-chr2:178247064..178249757,2	K562	blood:
2	chr2:178221720..178223963-chr2:178229947..178231647,2	K562	blood:
3	chr2:178222001..178225434-chr2:178226745..178229675,3	K562	blood:

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10173667	1.00[AMR][1000 genomes]
rs10186918	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11892161	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11900380	1.00[AMR][1000 genomes]
rs13420517	1.00[AMR][1000 genomes]
rs28552775	1.00[AMR][1000 genomes]
rs58936343	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60692804	1.00[AMR][1000 genomes]
rs6758141	1.00[AMR][1000 genomes]
rs73976182	1.00[AMR][1000 genomes]
rs73976751	1.00[AMR][1000 genomes]
rs73979736	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9917195	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv3051	chr2:178193436-178239394	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv962042	chr2:178220899-178232397	Active TSS Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:178203400-178244400	Weak transcription	HSMM	muscle
2	chr2:178212000-178224400	Weak transcription	Fetal Heart	heart
3	chr2:178214400-178228200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr2:178216800-178225400	Weak transcription	Ovary	ovary
5	chr2:178218000-178225200	Weak transcription	HSMMtube	muscle
6	chr2:178218000-178256200	Weak transcription	HepG2	liver
7	chr2:178218400-178224200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
8	chr2:178218400-178225000	Weak transcription	Fetal Muscle Leg	muscle
9	chr2:178219200-178233600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr2:178219400-178224000	Weak transcription	Primary neutrophils fromperipheralblood	blood
11	chr2:178219400-178224000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr2:178221000-178225200	Weak transcription	Brain Inferior Temporal Lobe	brain
13	chr2:178221600-178240600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr2:178221800-178224200	Weak transcription	Monocytes-CD14+_RO01746	blood
15	chr2:178223200-178224600	Weak transcription	Brain Anterior Caudate	brain
16	chr2:178223200-178224800	Weak transcription	Brain Cingulate Gyrus	brain
17	chr2:178223200-178225200	Weak transcription	Brain Substantia Nigra	brain
18	chr2:178223200-178225600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr2:178223400-178224600	Weak transcription	Brain Hippocampus Middle	brain
20	chr2:178223600-178225600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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