Variant report

Variant	rs73976751
Chromosome Location	chr2:178384269-178384270
allele	C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:178377118..178378768-chr2:178383281..178385562,2	K562	blood:

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10173667	1.00[AMR][1000 genomes]
rs10186918	1.00[AMR][1000 genomes]
rs11892161	1.00[AMR][1000 genomes]
rs11898798	1.00[AMR][1000 genomes]
rs11900380	1.00[AMR][1000 genomes]
rs13413244	1.00[AMR][1000 genomes]
rs13420517	1.00[AMR][1000 genomes]
rs28552775	1.00[AMR][1000 genomes]
rs58936343	1.00[AMR][1000 genomes]
rs60692804	1.00[AMR][1000 genomes]
rs6758141	1.00[AMR][1000 genomes]
rs73976182	1.00[AMR][1000 genomes]
rs73979736	1.00[AMR][1000 genomes]
rs9917195	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999086	chr2:178262348-178773585	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv536055	chr2:178262348-178773585	Active TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:101 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:178296400-178397000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
2	chr2:178331400-178388400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
3	chr2:178331600-178385600	Weak transcription	Spleen	Spleen
4	chr2:178331800-178389400	Weak transcription	Skeletal Muscle Male	skeletal muscle
5	chr2:178332000-178392800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr2:178332000-178393800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr2:178335000-178410600	Weak transcription	Thymus	Thymus
8	chr2:178337600-178386200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
9	chr2:178338000-178403000	Weak transcription	Brain Hippocampus Middle	brain
10	chr2:178339800-178394400	Weak transcription	Hela-S3	cervix
11	chr2:178342400-178392000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
12	chr2:178342600-178391000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr2:178343800-178391200	Weak transcription	HMEC	breast
14	chr2:178348400-178402600	Weak transcription	NHDF-Ad	bronchial
15	chr2:178349800-178407800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr2:178350000-178407000	Weak transcription	Osteobl	bone
17	chr2:178354600-178392000	Weak transcription	Brain Anterior Caudate	brain
18	chr2:178355000-178384400	Weak transcription	Rectal Smooth Muscle	rectum
19	chr2:178356000-178405400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
20	chr2:178356400-178384400	Weak transcription	Colon Smooth Muscle	Colon
21	chr2:178358400-178390000	Weak transcription	Colonic Mucosa	Colon
22	chr2:178358600-178384400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
23	chr2:178358600-178386800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
24	chr2:178358600-178388400	Weak transcription	Sigmoid Colon	Sigmoid Colon
25	chr2:178358600-178406000	Weak transcription	Ovary	ovary
26	chr2:178358600-178417000	Weak transcription	Aorta	Aorta
27	chr2:178358800-178388600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr2:178358800-178396600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
29	chr2:178359800-178386000	Weak transcription	Muscle Satellite Cultured Cells	--
30	chr2:178360600-178405400	Weak transcription	NH-A	brain
31	chr2:178362400-178395600	Strong transcription	Monocytes-CD14+_RO01746	blood
32	chr2:178363000-178395600	Strong transcription	Primary monocytes fromperipheralblood	blood
33	chr2:178364400-178416600	Weak transcription	Esophagus	oesophagus
34	chr2:178367800-178397200	Weak transcription	Psoas Muscle	Psoas
35	chr2:178370200-178391200	Strong transcription	Primary neutrophils fromperipheralblood	blood
36	chr2:178371000-178388400	Weak transcription	Small Intestine	intestine
37	chr2:178371400-178399800	Weak transcription	Cortex derived primary cultured neurospheres	brain
38	chr2:178372600-178405400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
39	chr2:178372800-178385000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
40	chr2:178372800-178399200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
41	chr2:178372800-178416600	Weak transcription	A549	lung
42	chr2:178374400-178394400	Strong transcription	HepG2	liver
43	chr2:178375200-178400800	Weak transcription	Lung	lung
44	chr2:178375400-178394400	Weak transcription	Fetal Muscle Leg	muscle
45	chr2:178375600-178413800	Weak transcription	K562	blood
46	chr2:178376000-178390600	Weak transcription	Fetal Brain Female	brain
47	chr2:178376000-178397400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
48	chr2:178376200-178386400	Weak transcription	Primary T cells from cord blood	blood
49	chr2:178376200-178407800	Weak transcription	Left Ventricle	heart
50	chr2:178376200-178416600	Weak transcription	Pancreas	Pancrea

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links