Variant report

Variant	rs13415423
Chromosome Location	chr2:184401122-184401123
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10166704	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10176963	1.00[CEU][hapmap];0.94[YRI][hapmap];0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11892191	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11895091	0.88[AFR][1000 genomes];0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13426853	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs16824762	0.95[EUR][1000 genomes]
rs2368447	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs56045031	0.88[AFR][1000 genomes];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs56078661	0.90[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs58789956	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs60041469	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6712313	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs72890255	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7584434	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7600207	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1012672	chr2:184363204-184571778	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	esv2757843	chr2:184368473-184558908	Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	esv2759105	chr2:184368473-184558908	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv428729	chr2:184368473-184558908	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:184398000-184405400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr2:184398200-184402800	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr2:184398400-184401200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
4	chr2:184398600-184401200	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr2:184400400-184406400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr2:184401000-184401200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
7	chr2:184401000-184401400	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr2:184401000-184401600	Enhancers	HUES48 Cell Line	embryonic stem cell
9	chr2:184401000-184401600	Enhancers	HUES64 Cell Line	embryonic stem cell
10	chr2:184401000-184402000	Enhancers	iPS-15b Cell Line	embryonic stem cell
11	chr2:184401000-184402000	Enhancers	iPS-18 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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