Variant report

Variant	rs7584434
Chromosome Location	chr2:184402831-184402832
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10166704	0.80[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10176963	0.92[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.84[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11892191	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11895091	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13415423	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs13426853	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs16824762	0.96[EUR][1000 genomes]
rs2368447	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs56045031	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs56078661	0.84[EUR][1000 genomes]
rs58789956	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs60041469	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6712313	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72890255	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7600207	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1012672	chr2:184363204-184571778	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	esv2757843	chr2:184368473-184558908	Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	esv2759105	chr2:184368473-184558908	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv428729	chr2:184368473-184558908	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7584434	ZC3H15	cis	cerebellum	SCAN

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:184398000-184405400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr2:184400400-184406400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr2:184401600-184406400	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr2:184401600-184406400	Weak transcription	Fetal Intestine Large	intestine
5	chr2:184401600-184406600	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr2:184402000-184416800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr2:184402200-184403000	Enhancers	Fetal Intestine Small	intestine
8	chr2:184402200-184403200	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr2:184402400-184403000	Enhancers	Duodenum Mucosa	Duodenum
10	chr2:184402800-184403400	Active TSS	Pancreatic Islets	Pancreatic Islet
11	chr2:184402800-184403600	Enhancers	H9 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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