Variant report

Variant	rs6712313
Chromosome Location	chr2:184392292-184392293
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10166704	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10176963	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.92[TSI][hapmap];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11892191	0.95[EUR][1000 genomes]
rs11895091	0.88[EUR][1000 genomes]
rs13415423	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13426853	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs16824762	0.91[EUR][1000 genomes]
rs2368447	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs56045031	0.90[EUR][1000 genomes]
rs56078661	0.87[EUR][1000 genomes]
rs58789956	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs60041469	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72890255	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7584434	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7600207	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1012672	chr2:184363204-184571778	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	esv2757843	chr2:184368473-184558908	Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	esv2759105	chr2:184368473-184558908	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv428729	chr2:184368473-184558908	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6712313	ZC3H15	cis	cerebellum	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:184383800-184393800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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