Variant report

Variant	rs13422164
Chromosome Location	chr2:185807742-185807743
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10170107	0.91[AFR][1000 genomes]
rs10176890	1.00[AMR][1000 genomes]
rs10192855	0.91[AFR][1000 genomes]
rs10195374	0.91[AFR][1000 genomes]
rs10197157	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12693402	0.91[AFR][1000 genomes]
rs13391680	0.84[AFR][1000 genomes]
rs13398531	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13415737	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13424978	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28738072	0.91[AFR][1000 genomes]
rs28805025	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28875563	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532412	chr2:185347334-186108701	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv520974	chr2:185742474-186148230	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:185803800-185811800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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