Variant report

Variant	rs13424978
Chromosome Location	chr2:185865005-185865006
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10170107	0.85[AFR][1000 genomes]
rs10176890	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10192855	1.00[YRI][hapmap];0.85[AFR][1000 genomes]
rs10195374	1.00[YRI][hapmap];0.85[AFR][1000 genomes]
rs10197157	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12693402	0.85[AFR][1000 genomes]
rs13391680	0.84[YRI][hapmap]
rs13398531	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13415737	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13422164	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16826222	0.93[YRI][hapmap]
rs16826223	0.93[YRI][hapmap]
rs16826232	0.93[YRI][hapmap]
rs16826235	0.93[YRI][hapmap]
rs16826270	0.93[YRI][hapmap]
rs16826274	0.92[YRI][hapmap]
rs28738072	0.85[AFR][1000 genomes]
rs28805025	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28875563	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7580721	0.93[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532412	chr2:185347334-186108701	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv520974	chr2:185742474-186148230	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	nsv875513	chr2:185835898-185989325	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:185865000-185865800	Enhancers	ES-I3 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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