Variant report

Variant	rs16826232
Chromosome Location	chr2:185733278-185733279
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10192855	0.94[YRI][hapmap]
rs10195374	0.94[YRI][hapmap]
rs10497656	1.00[AMR][1000 genomes]
rs16826194	0.81[YRI][hapmap];0.84[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs16826203	0.81[YRI][hapmap];0.93[AMR][1000 genomes]
rs16826204	0.81[AMR][1000 genomes]
rs16826206	0.93[AMR][1000 genomes]
rs16826213	0.93[AMR][1000 genomes]
rs16826218	0.81[YRI][hapmap];0.93[AMR][1000 genomes]
rs16826220	0.93[AMR][1000 genomes]
rs16826222	1.00[YRI][hapmap]
rs16826223	1.00[YRI][hapmap]
rs16826235	1.00[YRI][hapmap]
rs16826259	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16826270	1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs16826274	1.00[YRI][hapmap]
rs7577653	0.93[AMR][1000 genomes]
rs7580721	1.00[YRI][hapmap]
rs7603786	0.80[YRI][hapmap];0.93[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532412	chr2:185347334-186108701	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv834484	chr2:185550006-185762728	Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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