Variant report
| Variant | rs7580721 |
|---|---|
| Chromosome Location | chr2:185703034-185703035 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr2:185702239..185704050-chr2:185710526..185712364,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:19)
| rs_ID | r2[population] |
|---|---|
| rs10192855 | 0.94[YRI][hapmap] |
| rs10195374 | 0.94[YRI][hapmap] |
| rs10497656 | 0.90[AFR][1000 genomes];0.93[AMR][1000 genomes] |
| rs16826194 | 0.81[YRI][hapmap];0.86[AMR][1000 genomes] |
| rs16826203 | 0.81[YRI][hapmap];0.90[AFR][1000 genomes];0.86[AMR][1000 genomes] |
| rs16826204 | 0.83[AFR][1000 genomes] |
| rs16826206 | 0.89[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs16826213 | 0.89[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs16826218 | 0.81[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs16826220 | 0.90[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs16826222 | 1.00[YRI][hapmap] |
| rs16826223 | 1.00[YRI][hapmap] |
| rs16826232 | 1.00[YRI][hapmap] |
| rs16826235 | 1.00[YRI][hapmap] |
| rs16826259 | 0.97[AFR][1000 genomes];0.93[AMR][1000 genomes] |
| rs16826270 | 1.00[YRI][hapmap];0.98[AFR][1000 genomes] |
| rs16826274 | 1.00[YRI][hapmap] |
| rs7577653 | 0.90[AFR][1000 genomes];0.86[AMR][1000 genomes] |
| rs7603786 | 0.80[YRI][hapmap];0.90[AFR][1000 genomes];0.86[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv532412 | chr2:185347334-186108701 | ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 23 gene(s) | inside rSNPs | diseases |
| 2 | nsv834484 | chr2:185550006-185762728 | Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Weak transcription | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
