Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10497656	0.93[YRI][hapmap];1.00[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs16826191	0.93[YRI][hapmap]
rs16826194	1.00[YRI][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16826204	0.93[YRI][hapmap];0.89[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs16826206	0.93[YRI][hapmap];0.95[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs16826213	0.93[YRI][hapmap];0.95[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs16826218	1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs16826220	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs16826222	0.80[YRI][hapmap]
rs16826223	0.81[YRI][hapmap]
rs16826232	0.81[YRI][hapmap]
rs16826235	0.81[YRI][hapmap]
rs16826259	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs16826270	0.81[YRI][hapmap];0.89[AFR][1000 genomes]
rs2887515	0.92[YRI][hapmap]
rs6716608	0.93[YRI][hapmap]
rs7577653	0.87[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7580721	0.81[YRI][hapmap]
rs7599271	0.93[YRI][hapmap]
rs7603786	1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532412	chr2:185347334-186108701	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv834484	chr2:185550006-185762728	Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:185646800-185649200	Weak transcription	Muscle Satellite Cultured Cells	--
2	chr2:185648400-185648800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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