Variant report

Variant	rs16826270
Chromosome Location	chr2:185755110-185755111
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10170107	0.85[AMR][1000 genomes]
rs10192855	0.94[YRI][hapmap];0.93[AMR][1000 genomes]
rs10195374	0.94[YRI][hapmap];0.85[AMR][1000 genomes]
rs10497656	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs16826194	0.81[YRI][hapmap]
rs16826203	0.81[YRI][hapmap];0.89[AFR][1000 genomes]
rs16826204	0.82[AFR][1000 genomes]
rs16826206	0.87[AFR][1000 genomes]
rs16826213	0.87[AFR][1000 genomes]
rs16826218	0.81[YRI][hapmap];0.86[AFR][1000 genomes]
rs16826220	0.89[AFR][1000 genomes]
rs16826222	1.00[YRI][hapmap]
rs16826223	1.00[YRI][hapmap]
rs16826232	1.00[YRI][hapmap]
rs16826235	1.00[YRI][hapmap]
rs16826259	0.98[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs16826274	1.00[YRI][hapmap]
rs28738072	0.93[AMR][1000 genomes]
rs7577653	0.89[AFR][1000 genomes]
rs7580721	1.00[YRI][hapmap]
rs7603786	0.80[YRI][hapmap];0.89[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532412	chr2:185347334-186108701	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv834484	chr2:185550006-185762728	Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv520974	chr2:185742474-186148230	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
4	nsv821846	chr2:185753228-185774831	Enhancers Active TSS Weak transcription Flanking Active TSS	TF binding region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:185754600-185755200	Enhancers	Muscle Satellite Cultured Cells	--
2	chr2:185754800-185755200	Enhancers	NH-A	brain
3	chr2:185755000-185755200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr2:185755000-185755200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr2:185755000-185755200	Enhancers	Ovary	ovary
6	chr2:185755000-185755400	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr2:185755000-185755400	Active TSS	NHLF	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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