Variant report

Variant	rs7577653
Chromosome Location	chr2:185672507-185672508
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10497656	0.93[YRI][hapmap];0.97[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs16826191	0.93[YRI][hapmap]
rs16826194	0.87[YRI][hapmap];1.00[AMR][1000 genomes]
rs16826203	0.87[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16826204	0.93[YRI][hapmap];0.89[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs16826206	0.93[YRI][hapmap];0.98[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs16826213	0.93[YRI][hapmap];0.98[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs16826218	0.87[YRI][hapmap];0.93[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs16826220	0.97[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs16826259	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs16826270	0.89[AFR][1000 genomes]
rs2887515	0.92[YRI][hapmap]
rs6716608	0.93[YRI][hapmap]
rs7599271	0.93[YRI][hapmap]
rs7603786	0.86[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532412	chr2:185347334-186108701	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv834484	chr2:185550006-185762728	Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:185667200-185674000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links