Variant report

Variant	rs16826220
Chromosome Location	chr2:185697528-185697529
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10497656	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs16826194	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs16826203	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs16826204	0.89[AFR][1000 genomes]
rs16826206	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16826213	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16826218	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16826259	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs16826270	0.89[AFR][1000 genomes]
rs7577653	0.97[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs7603786	0.97[AFR][1000 genomes];0.86[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532412	chr2:185347334-186108701	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv834484	chr2:185550006-185762728	Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv508189	chr2:185695276-185701287	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:185697200-185699400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
2	chr2:185697200-185699800	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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