Variant report
| Variant | rs16826274 |
|---|---|
| Chromosome Location | chr2:185756082-185756083 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:23)
| rs_ID | r2[population] |
|---|---|
| rs10170107 | 0.85[AMR][1000 genomes] |
| rs10192855 | 0.93[YRI][hapmap];0.93[AMR][1000 genomes] |
| rs10195374 | 0.93[YRI][hapmap];0.85[AMR][1000 genomes] |
| rs10497656 | 0.89[AFR][1000 genomes];0.85[AMR][1000 genomes] |
| rs13391680 | 0.82[YRI][hapmap] |
| rs16826183 | 0.86[ASW][hapmap];1.00[MEX][hapmap];0.88[MKK][hapmap] |
| rs16826203 | 0.89[AFR][1000 genomes] |
| rs16826204 | 0.82[AFR][1000 genomes] |
| rs16826206 | 0.87[AFR][1000 genomes] |
| rs16826213 | 0.87[AFR][1000 genomes] |
| rs16826218 | 0.86[AFR][1000 genomes] |
| rs16826220 | 0.89[AFR][1000 genomes] |
| rs16826222 | 1.00[YRI][hapmap] |
| rs16826223 | 1.00[YRI][hapmap] |
| rs16826232 | 1.00[YRI][hapmap] |
| rs16826235 | 1.00[YRI][hapmap] |
| rs16826259 | 0.98[AFR][1000 genomes];0.85[AMR][1000 genomes] |
| rs16826270 | 1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs28738072 | 0.93[AMR][1000 genomes] |
| rs2887515 | 1.00[ASW][hapmap];0.87[LWK][hapmap];1.00[MEX][hapmap];0.92[MKK][hapmap] |
| rs7577653 | 0.89[AFR][1000 genomes] |
| rs7580721 | 1.00[YRI][hapmap] |
| rs7603786 | 0.89[AFR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv532412 | chr2:185347334-186108701 | ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 23 gene(s) | inside rSNPs | diseases |
| 2 | nsv834484 | chr2:185550006-185762728 | Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Weak transcription | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| 3 | nsv520974 | chr2:185742474-186148230 | Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 22 gene(s) | inside rSNPs | diseases |
| 4 | nsv821846 | chr2:185753228-185774831 | Enhancers Active TSS Weak transcription Flanking Active TSS | TF binding region | 1 gene(s) | inside rSNPs | diseases |
| 5 | nsv818104 | chr2:185756082-185771745 | Enhancers Weak transcription | TF binding region | 1 gene(s) | inside rSNPs | diseases |
| 6 | nsv517466 | chr2:185756082-185778262 | Enhancers Weak transcription | TF binding region | 1 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
