Variant report

Variant	rs28875563
Chromosome Location	chr2:185870583-185870584
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10170107	0.84[AFR][1000 genomes]
rs10176890	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10192855	0.84[AFR][1000 genomes]
rs10195374	0.84[AFR][1000 genomes]
rs10197157	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12693402	0.84[AFR][1000 genomes]
rs13398531	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13415737	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13422164	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13424978	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2217370	0.80[AFR][1000 genomes]
rs28738072	0.84[AFR][1000 genomes]
rs28805025	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532412	chr2:185347334-186108701	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv520974	chr2:185742474-186148230	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	nsv875513	chr2:185835898-185989325	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv459980	chr2:185865400-185996258	Weak transcription ZNF genes & repeats Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv584005	chr2:185865400-185996258	Enhancers ZNF genes & repeats Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv875514	chr2:185865740-186239607	Enhancers ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:185868200-185872400	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr2:185869600-185871800	Enhancers	iPS-18 Cell Line	embryonic stem cell
3	chr2:185869800-185871800	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr2:185870000-185870600	Enhancers	iPS-20b Cell Line	embryonic stem cell
5	chr2:185870200-185871000	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr2:185870400-185870800	Enhancers	iPS-15b Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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