Variant report

Variant	rs13422729
Chromosome Location	chr2:205767971-205767972
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10175683	0.91[ASN][1000 genomes]
rs10189739	0.83[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs10201810	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10210279	0.82[AFR][1000 genomes]
rs12327977	0.81[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs12328364	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12328369	0.86[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs12612230	0.83[EUR][1000 genomes]
rs12620769	0.83[AFR][1000 genomes]
rs13408553	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs16836712	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs57351682	0.83[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs58687976	0.85[EUR][1000 genomes]
rs58798518	0.84[AFR][1000 genomes]
rs59922842	0.93[EUR][1000 genomes]
rs6726748	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6755344	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7577347	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998485	chr2:205407813-206184006	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv536122	chr2:205407813-206184006	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv1010210	chr2:205489653-206076013	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	esv2757846	chr2:205539832-205841174	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	esv2759111	chr2:205539832-205841174	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:205752600-205770000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr2:205760000-205770200	Weak transcription	Colon Smooth Muscle	Colon
3	chr2:205764200-205768000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
4	chr2:205765800-205770600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr2:205766000-205768600	Weak transcription	Aorta	Aorta
6	chr2:205766200-205772200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr2:205766800-205769000	Weak transcription	Pancreas	Pancrea

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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