Variant report

Variant	rs59922842
Chromosome Location	chr2:205751552-205751553
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10201810	0.85[EUR][1000 genomes]
rs12328364	0.85[EUR][1000 genomes]
rs12612230	0.80[EUR][1000 genomes]
rs13408553	0.80[AMR][1000 genomes]
rs13422729	0.93[EUR][1000 genomes]
rs16836712	0.85[EUR][1000 genomes]
rs3919589	0.85[ASN][1000 genomes]
rs58687976	0.85[EUR][1000 genomes]
rs6726748	0.85[EUR][1000 genomes]
rs6747533	0.85[ASN][1000 genomes]
rs6755344	0.85[EUR][1000 genomes]
rs6759876	0.82[ASN][1000 genomes]
rs7577347	0.85[EUR][1000 genomes]
rs7586528	0.85[ASN][1000 genomes]
rs7601495	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998485	chr2:205407813-206184006	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv536122	chr2:205407813-206184006	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv1010210	chr2:205489653-206076013	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	esv2757846	chr2:205539832-205841174	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	esv2759111	chr2:205539832-205841174	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv875725	chr2:205572718-205760800	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:205744800-205752400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr2:205745400-205752400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr2:205746800-205757000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
4	chr2:205747400-205752400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr2:205747600-205752000	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr2:205747600-205752200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr2:205747600-205759600	Weak transcription	Colon Smooth Muscle	Colon
8	chr2:205751200-205751600	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr2:205751200-205752200	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr2:205751200-205752400	Weak transcription	H1 Cell Line	embryonic stem cell
11	chr2:205751200-205752400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
12	chr2:205751200-205752400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr2:205751400-205752000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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