Variant report

Variant	rs16836712
Chromosome Location	chr2:205742716-205742717
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10175683	0.85[ASN][1000 genomes]
rs10189739	0.91[ASN][1000 genomes]
rs10201810	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12327977	0.91[ASN][1000 genomes]
rs12328364	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12328369	0.91[ASN][1000 genomes]
rs12612230	0.90[EUR][1000 genomes]
rs12617432	1.00[ASN][1000 genomes]
rs12620769	1.00[ASN][1000 genomes]
rs13393061	0.80[EUR][1000 genomes]
rs13408553	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13422729	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs28850029	0.84[EUR][1000 genomes]
rs57351682	0.97[ASN][1000 genomes]
rs58687976	0.92[EUR][1000 genomes]
rs58798518	1.00[ASN][1000 genomes]
rs59922842	0.85[EUR][1000 genomes]
rs6725702	0.80[EUR][1000 genomes]
rs6726748	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6755344	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73068606	0.80[EUR][1000 genomes]
rs73068608	0.80[EUR][1000 genomes]
rs7577347	0.92[EUR][1000 genomes]
rs7605954	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998485	chr2:205407813-206184006	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv536122	chr2:205407813-206184006	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv1010210	chr2:205489653-206076013	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	esv2757846	chr2:205539832-205841174	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	esv2759111	chr2:205539832-205841174	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv875725	chr2:205572718-205760800	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:205735000-205746000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr2:205735400-205742800	Weak transcription	Rectal Smooth Muscle	rectum
3	chr2:205735400-205746600	Weak transcription	Ovary	ovary
4	chr2:205736200-205746000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr2:205736400-205743600	Weak transcription	Duodenum Smooth Muscle	Duodenum
6	chr2:205739800-205745000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr2:205739800-205746800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
8	chr2:205740800-205745000	Weak transcription	Primary T cells fromperipheralblood	blood
9	chr2:205742200-205742800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
10	chr2:205742200-205743000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
11	chr2:205742200-205743200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
12	chr2:205742200-205746000	Enhancers	Primary T cells from cord blood	blood
13	chr2:205742200-205746200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
14	chr2:205742200-205747800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
15	chr2:205742400-205742800	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
16	chr2:205742400-205743200	Enhancers	Primary T helper cells fromperipheralblood	blood
17	chr2:205742400-205743800	Weak transcription	Stomach Smooth Muscle	stomach
18	chr2:205742400-205744200	Enhancers	Colon Smooth Muscle	Colon
19	chr2:205742400-205745000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
20	chr2:205742600-205743000	Enhancers	Primary T helper naive cells from peripheral blood	blood
21	chr2:205742600-205744200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
22	chr2:205742600-205746400	Weak transcription	Fetal Brain Male	brain

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