Variant report

Variant	rs7605954
Chromosome Location	chr2:205710514-205710515
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:205707571..205709179-chr2:205709317..205711354,2	MCF-7	breast:

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10189739	0.82[AFR][1000 genomes]
rs10201810	0.85[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs10210279	0.83[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12327977	0.82[AFR][1000 genomes]
rs12328364	0.85[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs12328369	0.85[AFR][1000 genomes]
rs12612230	0.86[EUR][1000 genomes]
rs13388261	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs13393061	0.91[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13393275	0.96[EUR][1000 genomes]
rs13408553	0.92[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs16836712	0.80[EUR][1000 genomes]
rs28850029	0.96[EUR][1000 genomes]
rs58687976	0.81[EUR][1000 genomes]
rs6435255	0.96[EUR][1000 genomes]
rs6725702	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6726748	0.84[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs6755344	0.85[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs73068606	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73068608	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73068611	0.90[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7577347	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998485	chr2:205407813-206184006	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv536122	chr2:205407813-206184006	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv1010210	chr2:205489653-206076013	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	esv2757846	chr2:205539832-205841174	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	esv2759111	chr2:205539832-205841174	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv875724	chr2:205572718-205727222	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
7	nsv875725	chr2:205572718-205760800	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
8	nsv875727	chr2:205626483-205715245	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv3120	chr2:205695611-205713292	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
10	esv3459948	chr2:205705963-205712223	Enhancers Flanking Active TSS Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
11	esv3459947	chr2:205706103-205712058	Enhancers Flanking Active TSS Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
12	esv3459949	chr2:205706103-205712058	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
13	esv12848	chr2:205706215-205711954	Enhancers Flanking Active TSS Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
14	nsv514983	chr2:205708651-205710747	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:205693400-205714600	Weak transcription	Fetal Kidney	kidney
2	chr2:205708200-205715400	Weak transcription	Rectal Smooth Muscle	rectum
3	chr2:205708400-205715200	Weak transcription	Psoas Muscle	Psoas
4	chr2:205708400-205718000	Weak transcription	Colon Smooth Muscle	Colon
5	chr2:205708600-205715200	Weak transcription	Fetal Lung	lung
6	chr2:205708800-205712400	Weak transcription	HSMM	muscle
7	chr2:205709000-205710800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr2:205709000-205711000	Weak transcription	NHEK	skin
9	chr2:205709400-205711000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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