Variant report

Variant	rs28850029
Chromosome Location	chr2:205720047-205720048
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10192244	0.81[ASN][1000 genomes]
rs10192436	0.81[ASN][1000 genomes]
rs10192534	0.81[ASN][1000 genomes]
rs10192639	0.81[ASN][1000 genomes]
rs10201810	0.84[EUR][1000 genomes]
rs10204710	0.81[ASN][1000 genomes]
rs12328364	0.84[EUR][1000 genomes]
rs12612230	0.83[EUR][1000 genomes]
rs13393061	0.96[EUR][1000 genomes]
rs13393275	0.92[EUR][1000 genomes]
rs13408553	0.84[EUR][1000 genomes]
rs16836646	0.81[ASN][1000 genomes]
rs16836712	0.84[EUR][1000 genomes]
rs58687976	0.85[EUR][1000 genomes]
rs59658764	0.81[ASN][1000 genomes]
rs6435254	0.81[ASN][1000 genomes]
rs6435255	0.92[EUR][1000 genomes]
rs6725702	0.96[EUR][1000 genomes]
rs6726748	0.84[EUR][1000 genomes]
rs6740517	0.81[ASN][1000 genomes]
rs6755344	0.84[EUR][1000 genomes]
rs73068606	0.96[EUR][1000 genomes]
rs73068608	0.96[EUR][1000 genomes]
rs7577347	0.85[EUR][1000 genomes]
rs7595417	0.81[ASN][1000 genomes]
rs7605954	0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998485	chr2:205407813-206184006	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv536122	chr2:205407813-206184006	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv1010210	chr2:205489653-206076013	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	esv2757846	chr2:205539832-205841174	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	esv2759111	chr2:205539832-205841174	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv875724	chr2:205572718-205727222	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
7	nsv875725	chr2:205572718-205760800	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:205718600-205725200	Weak transcription	Fetal Lung	lung
2	chr2:205719000-205728200	Weak transcription	Gastric	stomach
3	chr2:205719400-205728000	Weak transcription	Rectal Smooth Muscle	rectum
4	chr2:205719600-205724000	Weak transcription	Colon Smooth Muscle	Colon

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