Variant report

Variant	rs13422986
Chromosome Location	chr2:179672033-179672034
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10221557	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10803917	1.00[AMR][1000 genomes]
rs10803918	1.00[AMR][1000 genomes]
rs13386186	0.82[AFR][1000 genomes]
rs13408466	1.00[AMR][1000 genomes]
rs13427087	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16866469	1.00[AMR][1000 genomes]
rs16866476	1.00[AMR][1000 genomes]
rs16866477	1.00[AMR][1000 genomes]
rs16866488	1.00[AMR][1000 genomes]
rs16866489	1.00[AMR][1000 genomes]
rs16866490	1.00[AMR][1000 genomes]
rs16866534	0.86[ASW][hapmap]
rs16866539	1.00[AMR][1000 genomes]
rs1812638	1.00[AMR][1000 genomes]
rs2366910	1.00[AMR][1000 genomes]
rs4894036	0.86[ASW][hapmap];1.00[AMR][1000 genomes]
rs4894038	1.00[AMR][1000 genomes]
rs4894039	1.00[AMR][1000 genomes]
rs4894043	1.00[AMR][1000 genomes]
rs4894052	1.00[YRI][hapmap]
rs56821960	1.00[AMR][1000 genomes]
rs57389274	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6433731	1.00[AMR][1000 genomes]
rs6433732	1.00[AMR][1000 genomes]
rs6738484	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72646882	1.00[AMR][1000 genomes]
rs72648903	1.00[AMR][1000 genomes]
rs922985	1.00[AMR][1000 genomes]
rs922986	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834470	chr2:179555152-179728726	Active TSS Genic enhancers Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv934108	chr2:179556852-179729925	Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:179646000-179684800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
2	chr2:179656800-179674400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr2:179659400-179698000	Weak transcription	Primary B cells from cord blood	blood
4	chr2:179664800-179673000	Active TSS	Right Atrium	heart
5	chr2:179666800-179684800	Weak transcription	Primary T helper cells fromperipheralblood	blood
6	chr2:179667200-179673000	Active TSS	Right Ventricle	heart
7	chr2:179668400-179673000	ZNF genes & repeats	Fetal Heart	heart
8	chr2:179669600-179672200	Active TSS	HSMMtube	muscle
9	chr2:179669600-179672400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr2:179669600-179680800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
11	chr2:179669800-179673200	Active TSS	Fetal Muscle Leg	muscle
12	chr2:179669800-179674600	Weak transcription	Primary T cells from cord blood	blood
13	chr2:179670000-179672800	Active TSS	Fetal Muscle Trunk	muscle
14	chr2:179670000-179674000	Active TSS	Psoas Muscle	Psoas
15	chr2:179670000-179674000	Active TSS	Skeletal Muscle Male	skeletal muscle
16	chr2:179671200-179672400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
17	chr2:179671200-179674000	Active TSS	Skeletal Muscle Female	skeletal muscle
18	chr2:179671400-179672200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr2:179671400-179672200	Enhancers	Aorta	Aorta
20	chr2:179671400-179672600	Enhancers	Gastric	stomach
21	chr2:179671400-179672600	Enhancers	Pancreas	Pancrea
22	chr2:179671800-179672400	Flanking Active TSS	HSMM	muscle
23	chr2:179671800-179673000	Active TSS	Left Ventricle	heart
24	chr2:179672000-179672200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
25	chr2:179672000-179672200	Enhancers	Thymus	Thymus
26	chr2:179672000-179672400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
27	chr2:179672000-179672600	Enhancers	Fetal Thymus	thymus

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links