Variant report

Variant	rs6433731
Chromosome Location	chr2:179626559-179626560
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:179626506..179627084-chr2:180801448..180802026,2	MCF-7	breast:
2	chr2:179625849..179626645-chr2:179778697..179779282,2	MCF-7	breast:

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10221557	1.00[AMR][1000 genomes]
rs10803917	0.90[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10803918	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11902672	0.82[AFR][1000 genomes]
rs13408466	1.00[AMR][1000 genomes]
rs13422986	1.00[AMR][1000 genomes]
rs13427087	1.00[AMR][1000 genomes]
rs16866469	1.00[AMR][1000 genomes]
rs16866476	1.00[AMR][1000 genomes]
rs16866477	1.00[AMR][1000 genomes]
rs16866485	0.82[AFR][1000 genomes]
rs16866488	1.00[AMR][1000 genomes]
rs16866489	1.00[AMR][1000 genomes]
rs16866490	1.00[AMR][1000 genomes]
rs16866539	1.00[AMR][1000 genomes]
rs1812638	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2366910	0.89[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4894036	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4894038	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4894039	1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4894043	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56821960	1.00[AMR][1000 genomes]
rs57389274	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6433732	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6738484	1.00[AMR][1000 genomes]
rs72646882	1.00[AMR][1000 genomes]
rs72648903	1.00[AMR][1000 genomes]
rs72648906	0.87[AFR][1000 genomes]
rs922985	0.90[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs922986	0.90[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834470	chr2:179555152-179728726	Active TSS Genic enhancers Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv934108	chr2:179556852-179729925	Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:179483200-179655400	Weak transcription	Adipose Nuclei	Adipose
2	chr2:179533600-179669200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
3	chr2:179577800-179640800	Weak transcription	Fetal Intestine Large	intestine
4	chr2:179590800-179640400	Weak transcription	Primary T helper cells PMA-I stimulated	--
5	chr2:179605400-179662400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr2:179610800-179671400	Weak transcription	Ovary	ovary
7	chr2:179614200-179645200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
8	chr2:179614400-179632400	Weak transcription	Primary hematopoietic stem cells	blood
9	chr2:179614800-179626600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
10	chr2:179614800-179628800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
11	chr2:179617200-179627800	Weak transcription	Psoas Muscle	Psoas
12	chr2:179618600-179626600	Genic enhancers	Fetal Heart	heart
13	chr2:179619000-179636000	Strong transcription	Left Ventricle	heart
14	chr2:179619200-179630400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
15	chr2:179620600-179634400	Weak transcription	Brain Anterior Caudate	brain
16	chr2:179621800-179629200	Weak transcription	Right Ventricle	heart
17	chr2:179622200-179628800	Weak transcription	Muscle Satellite Cultured Cells	--
18	chr2:179622600-179628800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr2:179622600-179628800	Strong transcription	HSMMtube	muscle
20	chr2:179622600-179640600	Weak transcription	Pancreas	Pancrea
21	chr2:179622800-179630000	Weak transcription	Primary B cells from peripheral blood	blood
22	chr2:179623800-179631200	Weak transcription	Primary T cells fromperipheralblood	blood
23	chr2:179624000-179629000	Weak transcription	Primary T helper cells fromperipheralblood	blood
24	chr2:179624200-179627600	Weak transcription	Primary B cells from cord blood	blood
25	chr2:179624400-179627600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
26	chr2:179625200-179626800	Strong transcription	Fetal Muscle Trunk	muscle
27	chr2:179625200-179627600	Strong transcription	Fetal Muscle Leg	muscle
28	chr2:179625800-179628000	Strong transcription	Skeletal Muscle Female	skeletal muscle
29	chr2:179625800-179629200	Strong transcription	Skeletal Muscle Male	skeletal muscle
30	chr2:179626200-179626600	Enhancers	NHDF-Ad	bronchial
31	chr2:179626400-179627000	Genic enhancers	HSMM	muscle
32	chr2:179626400-179628000	Weak transcription	Primary T cells from cord blood	blood

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