Variant report

Variant	rs72648906
Chromosome Location	chr2:179613258-179613259
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10803917	0.87[AFR][1000 genomes]
rs10803918	0.81[AFR][1000 genomes]
rs11902672	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11902709	0.85[AFR][1000 genomes]
rs16866469	0.83[AFR][1000 genomes]
rs16866479	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16866485	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1812638	0.87[AFR][1000 genomes]
rs2366910	0.87[AFR][1000 genomes]
rs4894036	0.97[AFR][1000 genomes]
rs4894038	0.87[AFR][1000 genomes]
rs4894039	0.81[AFR][1000 genomes]
rs4894043	0.87[AFR][1000 genomes]
rs55895721	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57389274	0.88[AFR][1000 genomes]
rs6433731	0.87[AFR][1000 genomes]
rs6433732	0.87[AFR][1000 genomes]
rs72648903	0.91[AFR][1000 genomes]
rs72648932	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs922985	0.87[AFR][1000 genomes]
rs922986	0.87[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834470	chr2:179555152-179728726	Active TSS Genic enhancers Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv934108	chr2:179556852-179729925	Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:179483200-179655400	Weak transcription	Adipose Nuclei	Adipose
2	chr2:179493000-179620800	Weak transcription	HSMM	muscle
3	chr2:179533600-179669200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
4	chr2:179577800-179640800	Weak transcription	Fetal Intestine Large	intestine
5	chr2:179584200-179616200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
6	chr2:179585200-179615800	Weak transcription	Primary B cells from peripheral blood	blood
7	chr2:179588200-179622800	Weak transcription	Primary T cells fromperipheralblood	blood
8	chr2:179590800-179640400	Weak transcription	Primary T helper cells PMA-I stimulated	--
9	chr2:179598000-179614200	Weak transcription	Primary B cells from cord blood	blood
10	chr2:179598600-179622200	Weak transcription	Primary T helper cells fromperipheralblood	blood
11	chr2:179600800-179616400	Weak transcription	Psoas Muscle	Psoas
12	chr2:179600800-179621200	Weak transcription	Pancreas	Pancrea
13	chr2:179603200-179614800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
14	chr2:179605400-179662400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr2:179606200-179614600	Weak transcription	Right Ventricle	heart
16	chr2:179609600-179615200	Genic enhancers	Skeletal Muscle Female	skeletal muscle
17	chr2:179610200-179616600	Genic enhancers	Fetal Heart	heart
18	chr2:179610400-179621000	Strong transcription	HSMMtube	muscle
19	chr2:179610800-179671400	Weak transcription	Ovary	ovary
20	chr2:179611800-179613400	Enhancers	HMEC	breast
21	chr2:179612800-179614000	Weak transcription	Fetal Muscle Trunk	muscle
22	chr2:179612800-179614000	Weak transcription	Left Ventricle	heart
23	chr2:179612800-179614200	Weak transcription	Primary T cells from cord blood	blood
24	chr2:179613000-179613800	Weak transcription	Fetal Muscle Leg	muscle
25	chr2:179613000-179613800	Weak transcription	Skeletal Muscle Male	skeletal muscle
26	chr2:179613000-179623600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell

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