Variant report

Variant	rs13425064
Chromosome Location	chr2:212328743-212328744
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:212318807..212321033-chr2:212328093..212330095,2	MCF-7	breast:
2	chr2:212328628..212332038-chr2:212332518..212335674,3	MCF-7	breast:

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10176444	0.94[JPT][hapmap];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10804195	0.83[JPT][hapmap]
rs10932375	0.90[EUR][1000 genomes]
rs11695594	0.83[JPT][hapmap]
rs12988192	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs13025469	0.88[JPT][hapmap];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13029575	0.89[EUR][1000 genomes]
rs13030346	0.82[EUR][1000 genomes]
rs1595061	0.82[CHB][hapmap];0.83[JPT][hapmap];0.96[ASN][1000 genomes]
rs1595069	0.94[ASN][1000 genomes]
rs1836713	0.85[ASN][1000 genomes]
rs1836715	0.82[JPT][hapmap];0.95[ASN][1000 genomes]
rs1836749	0.83[JPT][hapmap]
rs1992029	0.80[CHB][hapmap];0.95[ASN][1000 genomes]
rs2371272	0.84[JPT][hapmap]
rs2371273	0.83[JPT][hapmap]
rs35115632	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4100599	0.80[CHB][hapmap];0.82[JPT][hapmap];0.95[ASN][1000 genomes]
rs4255906	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4302167	0.80[CHB][hapmap];0.94[JPT][hapmap];0.82[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs4334429	0.96[ASN][1000 genomes]
rs4490118	0.82[CHB][hapmap];0.94[JPT][hapmap];0.98[ASN][1000 genomes]
rs4569408	0.95[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs59962289	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6435628	0.82[CHB][hapmap];0.82[JPT][hapmap];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6713894	0.80[CHB][hapmap];0.94[JPT][hapmap];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6726567	0.81[CHB][hapmap];0.94[JPT][hapmap];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7571402	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834523	chr2:212163236-212331393	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases
2	nsv1000722	chr2:212272622-212465143	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv875778	chr2:212297838-212360994	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv460066	chr2:212307077-212329416	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a
5	nsv584316	chr2:212307077-212329416	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a
6	nsv460067	chr2:212313400-212378242	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	nsv584317	chr2:212313400-212378242	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
8	esv2753335	chr2:212322858-212424019	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:212320400-212332800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr2:212324400-212330600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr2:212327800-212328800	Enhancers	iPS-20b Cell Line	embryonic stem cell
4	chr2:212328000-212328800	Enhancers	HUES6 Cell Line	embryonic stem cell
5	chr2:212328000-212328800	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr2:212328000-212328800	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr2:212328000-212329000	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr2:212328000-212329200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr2:212328200-212328800	Enhancers	H1 Cell Line	embryonic stem cell
10	chr2:212328200-212328800	Enhancers	iPS-15b Cell Line	embryonic stem cell
11	chr2:212328400-212330400	Weak transcription	Cortex derived primary cultured neurospheres	brain
12	chr2:212328600-212328800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
13	chr2:212328600-212333800	Weak transcription	H9 Cell Line	embryonic stem cell

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