Variant report

Variant	rs6435628
Chromosome Location	chr2:212319043-212319044
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:212318807..212321033-chr2:212328093..212330095,2	MCF-7	breast:

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10176444	0.81[CEU][hapmap];0.90[CHB][hapmap];0.88[JPT][hapmap];0.93[ASN][1000 genomes]
rs10804195	0.81[CHB][hapmap]
rs10932375	0.87[CEU][hapmap];0.84[EUR][1000 genomes]
rs11695594	0.81[CHB][hapmap]
rs13025469	0.80[CEU][hapmap];0.89[CHB][hapmap];0.82[JPT][hapmap];0.87[ASN][1000 genomes]
rs13029575	0.81[CEU][hapmap];0.83[EUR][1000 genomes]
rs13030346	0.80[CEU][hapmap]
rs13425064	0.82[CHB][hapmap];0.82[JPT][hapmap];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1595061	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs1595069	0.98[ASN][1000 genomes]
rs1816531	0.82[CHB][hapmap]
rs1836713	0.88[ASN][1000 genomes]
rs1836715	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs1836749	0.81[CHB][hapmap]
rs1992029	0.95[CHB][hapmap];0.93[JPT][hapmap];0.98[ASN][1000 genomes]
rs2371272	0.82[CHB][hapmap]
rs2371273	0.81[CHB][hapmap]
rs4100599	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs4255906	0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4302167	0.80[CEU][hapmap];0.95[CHB][hapmap];0.88[JPT][hapmap];0.93[ASN][1000 genomes]
rs4334429	0.99[ASN][1000 genomes]
rs4490118	1.00[CHB][hapmap];0.88[JPT][hapmap];0.96[ASN][1000 genomes]
rs4569408	0.80[CEU][hapmap];1.00[CHB][hapmap];0.83[JPT][hapmap];0.96[ASN][1000 genomes]
rs59962289	0.86[ASN][1000 genomes]
rs6713894	0.80[CEU][hapmap];0.95[CHB][hapmap];0.88[JPT][hapmap];0.80[AMR][1000 genomes];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6726567	0.95[CHB][hapmap];0.88[JPT][hapmap];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7571402	0.80[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834523	chr2:212163236-212331393	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases
2	nsv1000722	chr2:212272622-212465143	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv875778	chr2:212297838-212360994	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv460066	chr2:212307077-212329416	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a
5	nsv584316	chr2:212307077-212329416	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a
6	nsv460067	chr2:212313400-212378242	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	nsv584317	chr2:212313400-212378242	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:212316400-212319600	Weak transcription	Fetal Lung	lung
2	chr2:212317800-212320400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr2:212318400-212319400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr2:212319000-212319400	Enhancers	Pancreatic Islets	Pancreatic Islet

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