Variant report

Variant	rs1836715
Chromosome Location	chr2:212307077-212307078
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10176444	0.89[CHB][hapmap];0.88[JPT][hapmap];0.91[ASN][1000 genomes]
rs10804195	0.85[CHB][hapmap];0.90[CHD][hapmap]
rs11695594	0.85[CHB][hapmap];0.90[CHD][hapmap]
rs12694233	0.85[CHD][hapmap]
rs13025469	0.89[CHB][hapmap];0.92[CHD][hapmap];0.82[JPT][hapmap];0.86[ASN][1000 genomes]
rs13425064	0.82[JPT][hapmap];0.95[ASN][1000 genomes]
rs1595061	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1595069	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1816531	0.84[CHB][hapmap]
rs1836713	0.88[ASN][1000 genomes]
rs1836749	0.85[CHB][hapmap];0.87[CHD][hapmap]
rs1992029	0.94[CEU][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];0.93[JPT][hapmap];0.91[MEX][hapmap];0.81[TSI][hapmap];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2371272	0.84[CHB][hapmap]
rs2371273	0.85[CHB][hapmap];0.83[CHD][hapmap]
rs4100599	0.94[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.83[TSI][hapmap];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4255906	0.92[ASN][1000 genomes]
rs4302167	0.95[CHB][hapmap];0.92[CHD][hapmap];0.88[JPT][hapmap];0.92[ASN][1000 genomes]
rs4334429	0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4490118	1.00[CHB][hapmap];0.88[JPT][hapmap];0.94[ASN][1000 genomes]
rs4569408	1.00[CHB][hapmap];0.82[JPT][hapmap];0.94[ASN][1000 genomes]
rs59962289	0.84[ASN][1000 genomes]
rs6435628	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs6710946	0.82[MEX][hapmap]
rs6713894	0.95[CHB][hapmap];0.95[CHD][hapmap];0.88[JPT][hapmap];0.93[ASN][1000 genomes]
rs6726567	0.95[CHB][hapmap];0.88[JPT][hapmap];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834523	chr2:212163236-212331393	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases
2	nsv1000722	chr2:212272622-212465143	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv875778	chr2:212297838-212360994	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv460066	chr2:212307077-212329416	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a
5	nsv584316	chr2:212307077-212329416	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:212303000-212313400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr2:212304600-212317800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr2:212306400-212311600	Weak transcription	Aorta	Aorta

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