Variant report

Variant	rs1342672
Chromosome Location	chr13:53985740-53985741
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10467521	0.93[EUR][1000 genomes]
rs10467522	0.93[EUR][1000 genomes]
rs1342680	0.87[EUR][1000 genomes]
rs1373283	0.84[AFR][1000 genomes];0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1443910	0.94[ASN][1000 genomes]
rs1550668	1.00[ASN][1000 genomes]
rs17059442	0.94[ASN][1000 genomes]
rs28477829	0.93[EUR][1000 genomes]
rs55712442	0.93[EUR][1000 genomes]
rs57238474	0.93[EUR][1000 genomes]
rs57409160	0.93[EUR][1000 genomes]
rs73184222	0.93[EUR][1000 genomes]
rs73184227	0.93[EUR][1000 genomes]
rs73184237	0.93[EUR][1000 genomes]
rs73184238	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73184239	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73190092	0.94[ASN][1000 genomes]
rs73201851	0.91[EUR][1000 genomes]
rs7489364	0.93[EUR][1000 genomes]
rs7987184	0.93[EUR][1000 genomes]
rs9285184	0.93[EUR][1000 genomes]
rs9285185	0.91[EUR][1000 genomes]
rs9285186	0.93[EUR][1000 genomes]
rs9285187	0.93[EUR][1000 genomes]
rs9316617	0.93[EUR][1000 genomes]
rs9316618	0.93[EUR][1000 genomes]
rs9316620	0.93[EUR][1000 genomes]
rs9316621	0.93[EUR][1000 genomes]
rs9316622	0.93[EUR][1000 genomes]
rs9316623	0.93[EUR][1000 genomes]
rs9316624	0.93[EUR][1000 genomes]
rs9316625	0.93[EUR][1000 genomes]
rs9563157	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9591510	0.93[EUR][1000 genomes]
rs9591511	0.93[EUR][1000 genomes]
rs9591512	0.93[EUR][1000 genomes]
rs9591513	0.93[EUR][1000 genomes]
rs9596788	0.87[EUR][1000 genomes]
rs9596789	0.87[EUR][1000 genomes]
rs9596790	0.87[EUR][1000 genomes]
rs9596792	0.91[EUR][1000 genomes]
rs9596797	0.89[EUR][1000 genomes]
rs9596798	0.93[EUR][1000 genomes]
rs9596800	0.93[EUR][1000 genomes]
rs9596801	0.93[EUR][1000 genomes]
rs9596802	0.93[EUR][1000 genomes]
rs9596804	0.93[EUR][1000 genomes]
rs9596805	0.93[EUR][1000 genomes]
rs9596806	0.93[EUR][1000 genomes]
rs9805225	0.93[EUR][1000 genomes]
rs9805231	0.93[EUR][1000 genomes]
rs9805484	0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050969	chr13:53665927-54064861	Bivalent Enhancer Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:53985200-53986000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr13:53985200-53986000	Weak transcription	Gastric	stomach
3	chr13:53985400-53986000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr13:53985600-53986000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr13:53985600-53986200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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