Variant report

Variant	rs1342680
Chromosome Location	chr13:53919811-53919812
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-OLFM4-9	chr13:53919346-53920093	NONHSAT034018

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs1017540	0.83[ASN][1000 genomes]
rs10467521	0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10467522	0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1342672	0.87[EUR][1000 genomes]
rs1373283	0.89[EUR][1000 genomes]
rs1418618	1.00[ASN][1000 genomes]
rs28403891	0.83[ASN][1000 genomes]
rs28477829	0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs55712442	0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs57238474	0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs57409160	0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73184222	0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73184227	0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73184237	0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73184238	0.87[EUR][1000 genomes]
rs73184239	0.87[EUR][1000 genomes]
rs73201851	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7489364	0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7987184	0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs894840	0.94[ASN][1000 genomes]
rs894842	0.83[ASN][1000 genomes]
rs9285184	0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9285185	0.95[EUR][1000 genomes]
rs9285186	0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9285187	0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9316617	0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9316618	0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9316620	0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9316621	0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9316622	0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9316623	0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9316624	0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9316625	0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9563157	0.87[EUR][1000 genomes]
rs9568849	0.83[ASN][1000 genomes]
rs9591508	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap]
rs9591510	0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9591511	0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9591512	0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9591513	0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9596786	0.86[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs9596787	0.89[ASN][1000 genomes]
rs9596788	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9596789	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9596790	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9596792	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9596797	0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9596798	0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9596800	0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9596801	0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9596802	0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9596804	0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9596805	0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9596806	0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9805225	0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9805231	0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9805484	0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050969	chr13:53665927-54064861	Bivalent Enhancer Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	esv2756368	chr13:53824599-53923599	Flanking Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:53919600-53920000	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell

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