Variant report

Variant	rs9596792
Chromosome Location	chr13:53935689-53935690
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:53934898..53936614-chr13:53941465..53943222,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000220990	Chromatin interaction

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs1017540	0.83[ASN][1000 genomes]
rs10467521	0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10467522	0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1342672	0.91[EUR][1000 genomes]
rs1342680	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1373283	0.93[EUR][1000 genomes]
rs1418618	1.00[ASN][1000 genomes]
rs28403891	0.83[ASN][1000 genomes]
rs28477829	0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs55712442	0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs57238474	0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs57409160	0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73184222	0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73184227	0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73184237	0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73184238	0.91[EUR][1000 genomes]
rs73184239	0.91[EUR][1000 genomes]
rs73201851	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7489364	0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7987184	0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs894840	0.94[ASN][1000 genomes]
rs894842	0.83[ASN][1000 genomes]
rs9285184	0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9285185	1.00[EUR][1000 genomes]
rs9285186	0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9285187	0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9316617	0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9316618	0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9316620	0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9316621	0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9316622	0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9316623	0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9316624	0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9316625	0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9563157	0.91[EUR][1000 genomes]
rs9568849	0.83[ASN][1000 genomes]
rs9591510	0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9591511	0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9591512	0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9591513	0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9596786	0.86[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs9596787	0.89[ASN][1000 genomes]
rs9596788	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9596789	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9596790	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9596797	0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9596798	0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9596800	0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9596801	0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9596802	0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9596804	0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9596805	0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9596806	0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9805225	0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9805231	0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9805484	0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050969	chr13:53665927-54064861	Bivalent Enhancer Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv1040236	chr13:53928195-53955060	Weak transcription Enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv1051184	chr13:53928195-53956469	Enhancers Weak transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:53935600-53936200	Enhancers	iPS-18 Cell Line	embryonic stem cell
2	chr13:53935600-53936200	Enhancers	iPS-20b Cell Line	embryonic stem cell
3	chr13:53935600-53937600	Weak transcription	HUES48 Cell Line	embryonic stem cell

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