Variant report

Variant	rs9596787
Chromosome Location	chr13:53918793-53918794
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs1342680	0.89[ASN][1000 genomes]
rs1418618	0.89[ASN][1000 genomes]
rs28477829	0.84[ASN][1000 genomes]
rs73184222	0.84[ASN][1000 genomes]
rs73201851	0.89[ASN][1000 genomes]
rs894840	0.84[ASN][1000 genomes]
rs9316617	0.84[ASN][1000 genomes]
rs9316618	0.84[ASN][1000 genomes]
rs9591508	1.00[CHB][hapmap];0.85[JPT][hapmap]
rs9591510	0.84[ASN][1000 genomes]
rs9596789	0.89[ASN][1000 genomes]
rs9596790	0.89[ASN][1000 genomes]
rs9596792	0.89[ASN][1000 genomes]
rs9596798	0.84[ASN][1000 genomes]
rs9596800	0.84[ASN][1000 genomes]
rs9805225	0.84[ASN][1000 genomes]
rs9805231	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050969	chr13:53665927-54064861	Bivalent Enhancer Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	esv2756368	chr13:53824599-53923599	Flanking Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:53917600-53919600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr13:53918200-53919000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
3	chr13:53918200-53919400	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell
4	chr13:53918200-53919800	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
5	chr13:53918400-53919400	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
6	chr13:53918400-53919600	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
7	chr13:53918600-53919000	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
8	chr13:53918600-53919600	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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