Variant report

Variant	rs894840
Chromosome Location	chr13:53973955-53973956
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs1017540	0.89[ASN][1000 genomes]
rs10467521	0.89[ASN][1000 genomes]
rs10467522	0.89[ASN][1000 genomes]
rs1342680	0.94[ASN][1000 genomes]
rs1418618	0.94[ASN][1000 genomes]
rs28403891	0.89[ASN][1000 genomes]
rs28477829	1.00[ASN][1000 genomes]
rs55712442	0.89[ASN][1000 genomes]
rs57238474	0.89[ASN][1000 genomes]
rs57409160	0.89[ASN][1000 genomes]
rs73184222	1.00[ASN][1000 genomes]
rs73184227	0.89[ASN][1000 genomes]
rs73184237	0.89[ASN][1000 genomes]
rs73201851	0.94[ASN][1000 genomes]
rs7489364	0.89[ASN][1000 genomes]
rs7987184	0.89[ASN][1000 genomes]
rs894842	0.89[ASN][1000 genomes]
rs9285184	0.89[ASN][1000 genomes]
rs9285186	0.89[ASN][1000 genomes]
rs9285187	0.89[ASN][1000 genomes]
rs9316617	1.00[ASN][1000 genomes]
rs9316618	1.00[ASN][1000 genomes]
rs9316620	0.89[ASN][1000 genomes]
rs9316621	0.89[ASN][1000 genomes]
rs9316622	0.89[ASN][1000 genomes]
rs9316623	0.89[ASN][1000 genomes]
rs9316624	0.89[ASN][1000 genomes]
rs9316625	0.89[ASN][1000 genomes]
rs9568849	0.89[ASN][1000 genomes]
rs9591508	1.00[CHB][hapmap];0.85[JPT][hapmap]
rs9591510	1.00[ASN][1000 genomes]
rs9591511	0.89[ASN][1000 genomes]
rs9591512	0.89[ASN][1000 genomes]
rs9591513	0.89[ASN][1000 genomes]
rs9596787	0.84[ASN][1000 genomes]
rs9596789	0.94[ASN][1000 genomes]
rs9596790	0.94[ASN][1000 genomes]
rs9596792	0.94[ASN][1000 genomes]
rs9596797	0.85[ASN][1000 genomes]
rs9596798	1.00[ASN][1000 genomes]
rs9596800	1.00[ASN][1000 genomes]
rs9596801	0.89[ASN][1000 genomes]
rs9596802	0.89[ASN][1000 genomes]
rs9596804	0.89[ASN][1000 genomes]
rs9596805	0.89[ASN][1000 genomes]
rs9596806	0.89[ASN][1000 genomes]
rs9805225	1.00[ASN][1000 genomes]
rs9805231	1.00[ASN][1000 genomes]
rs9805484	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050969	chr13:53665927-54064861	Bivalent Enhancer Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:53972400-53983200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr13:53973400-53974000	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr13:53973400-53974000	Enhancers	iPS-20b Cell Line	embryonic stem cell
4	chr13:53973600-53974000	Enhancers	H1 Cell Line	embryonic stem cell

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