Variant report

Variant	rs9568849
Chromosome Location	chr13:53979507-53979508
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs1017540	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10467521	1.00[ASN][1000 genomes]
rs10467522	1.00[ASN][1000 genomes]
rs1342680	0.83[ASN][1000 genomes]
rs1418618	0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs28403891	1.00[ASN][1000 genomes]
rs28477829	0.89[ASN][1000 genomes]
rs55712442	1.00[ASN][1000 genomes]
rs57238474	1.00[ASN][1000 genomes]
rs57409160	1.00[ASN][1000 genomes]
rs73184222	0.89[ASN][1000 genomes]
rs73184227	1.00[ASN][1000 genomes]
rs73184237	1.00[ASN][1000 genomes]
rs73201851	0.83[ASN][1000 genomes]
rs7489364	1.00[ASN][1000 genomes]
rs7987184	1.00[ASN][1000 genomes]
rs894840	0.89[ASN][1000 genomes]
rs894842	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9285184	1.00[ASN][1000 genomes]
rs9285186	1.00[ASN][1000 genomes]
rs9285187	1.00[ASN][1000 genomes]
rs9316617	0.89[ASN][1000 genomes]
rs9316618	0.89[ASN][1000 genomes]
rs9316620	1.00[ASN][1000 genomes]
rs9316621	1.00[ASN][1000 genomes]
rs9316622	1.00[ASN][1000 genomes]
rs9316623	1.00[ASN][1000 genomes]
rs9316624	1.00[ASN][1000 genomes]
rs9316625	1.00[ASN][1000 genomes]
rs9591510	0.89[ASN][1000 genomes]
rs9591511	1.00[ASN][1000 genomes]
rs9591512	1.00[ASN][1000 genomes]
rs9591513	1.00[ASN][1000 genomes]
rs9596789	0.83[ASN][1000 genomes]
rs9596790	0.83[ASN][1000 genomes]
rs9596792	0.83[ASN][1000 genomes]
rs9596798	0.89[ASN][1000 genomes]
rs9596800	0.89[ASN][1000 genomes]
rs9596801	1.00[ASN][1000 genomes]
rs9596802	1.00[ASN][1000 genomes]
rs9596804	1.00[ASN][1000 genomes]
rs9596805	1.00[ASN][1000 genomes]
rs9596806	1.00[ASN][1000 genomes]
rs9805225	0.89[ASN][1000 genomes]
rs9805231	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050969	chr13:53665927-54064861	Bivalent Enhancer Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:53972400-53983200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr13:53979400-53980000	Active TSS	Gastric	stomach

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