Variant report

Variant	rs13431245
Chromosome Location	chr2:86167602-86167603
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10167259	0.82[AFR][1000 genomes]
rs10779967	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[LWK][hapmap];0.92[ASN][1000 genomes]
rs11127015	0.92[ASN][1000 genomes]
rs11885520	0.84[ASN][1000 genomes]
rs11886175	0.92[ASN][1000 genomes]
rs11890563	0.92[ASN][1000 genomes]
rs11891096	0.92[ASN][1000 genomes]
rs11895453	0.92[ASN][1000 genomes]
rs13390107	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs13420958	0.92[ASN][1000 genomes]
rs1469982	0.92[ASN][1000 genomes]
rs1978842	0.86[MEX][hapmap]
rs2059353	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[LWK][hapmap];0.92[ASN][1000 genomes]
rs2288117	0.92[ASN][1000 genomes]
rs311561	0.92[ASN][1000 genomes]
rs311570	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs311580	0.92[ASN][1000 genomes]
rs311581	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[LWK][hapmap];0.88[MKK][hapmap];0.92[ASN][1000 genomes]
rs311582	0.92[ASN][1000 genomes]
rs311583	0.92[ASN][1000 genomes]
rs311584	0.92[ASN][1000 genomes]
rs34892520	0.84[ASN][1000 genomes]
rs3810828	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs4832027	0.92[ASN][1000 genomes]
rs4832239	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs57339071	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs58077381	0.92[ASN][1000 genomes]
rs6715623	0.92[ASN][1000 genomes]
rs6749218	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs6752561	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs72847843	0.92[ASN][1000 genomes]
rs72847853	0.92[ASN][1000 genomes]
rs7340327	0.92[ASN][1000 genomes]
rs7558040	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs7599498	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[LWK][hapmap];0.93[MEX][hapmap];1.00[MKK][hapmap];0.92[ASN][1000 genomes]
rs929916	0.92[ASN][1000 genomes]
rs9677675	0.92[ASN][1000 genomes]
rs9679308	0.92[ASN][1000 genomes]
rs979940	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs13431245	POLR1A	cis	parietal	SCAN

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:86164200-86169200	Weak transcription	Pancreas	Pancrea
2	chr2:86164200-86169400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr2:86164800-86168400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr2:86167600-86167800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr2:86167600-86167800	Enhancers	Spleen	Spleen
6	chr2:86167600-86168400	Enhancers	Liver	Liver

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