Variant report

Variant	rs13390107
Chromosome Location	chr2:86175611-86175612
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:86174630..86176169-chr2:86176338..86177867,2	MCF-7	breast:
2	chr2:86112745..86122516-chr2:86175080..86185190,27	MCF-7	breast:
3	chr2:86171021..86172691-chr2:86174826..86177732,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000115525	Chromatin interaction
ENSG00000232504	Chromatin interaction

Extended variants
information (count: 49 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10167259	0.81[AFR][1000 genomes]
rs10779967	1.00[ASN][1000 genomes]
rs11127015	1.00[ASN][1000 genomes]
rs11885520	0.86[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs11886175	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11890563	1.00[ASN][1000 genomes]
rs11891096	1.00[ASN][1000 genomes]
rs11895453	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11903682	0.84[AMR][1000 genomes]
rs13420958	1.00[ASN][1000 genomes]
rs13431245	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs1469981	0.86[AMR][1000 genomes]
rs1469982	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17579744	0.86[AMR][1000 genomes]
rs2059353	1.00[ASN][1000 genomes]
rs2288117	1.00[ASN][1000 genomes]
rs311561	1.00[ASN][1000 genomes]
rs311570	1.00[ASN][1000 genomes]
rs311580	1.00[ASN][1000 genomes]
rs311581	1.00[ASN][1000 genomes]
rs311582	1.00[ASN][1000 genomes]
rs311583	1.00[ASN][1000 genomes]
rs311584	1.00[ASN][1000 genomes]
rs34892520	0.92[ASN][1000 genomes]
rs3770073	0.84[ASN][1000 genomes]
rs3810828	1.00[ASN][1000 genomes]
rs4832027	1.00[ASN][1000 genomes]
rs4832239	1.00[ASN][1000 genomes]
rs57339071	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58077381	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6707736	0.83[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs6708805	0.83[AMR][1000 genomes]
rs6715623	1.00[ASN][1000 genomes]
rs6741224	0.83[AMR][1000 genomes]
rs6749218	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6752561	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72847838	0.86[AMR][1000 genomes]
rs72847843	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72847845	0.84[AMR][1000 genomes]
rs72847853	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7340327	1.00[ASN][1000 genomes]
rs7558040	1.00[ASN][1000 genomes]
rs7569121	0.86[AMR][1000 genomes]
rs7597608	0.82[ASN][1000 genomes]
rs7599498	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs929916	1.00[ASN][1000 genomes]
rs9677675	1.00[ASN][1000 genomes]
rs9679308	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs979940	1.00[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs13390107	MRPL35	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:86172800-86176200	Weak transcription	HepG2	liver
2	chr2:86173400-86175800	Weak transcription	Liver	Liver
3	chr2:86175000-86183600	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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