Variant report

Variant	rs7569121
Chromosome Location	chr2:86234545-86234546
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:86221261..86224773-chr2:86231605..86235552,4	K562	blood:
2	chr2:86231423..86233743-chr2:86234007..86236166,2	K562	blood:
3	chr2:86227255..86230003-chr2:86232483..86235782,3	K562	blood:

Extended variants
information (count: 28 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10168997	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11127012	0.91[CEU][hapmap]
rs11885520	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11886175	0.96[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs11895453	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11903682	0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13390107	0.86[AMR][1000 genomes]
rs1469981	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1469982	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17579744	1.00[CEU][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1978842	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs311562	0.81[AFR][1000 genomes]
rs311563	0.91[AFR][1000 genomes]
rs57339071	0.86[AMR][1000 genomes]
rs58077381	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6707736	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6708805	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6741224	1.00[CEU][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6749218	0.86[AMR][1000 genomes]
rs6752561	0.84[AMR][1000 genomes]
rs72847838	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72847843	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72847845	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72847853	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7599498	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9679308	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1001104	chr2:86182021-86271923	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv535807	chr2:86182021-86271923	Strong transcription Enhancers Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7569121	MRPL35	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:86234200-86238800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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