Variant report
| Variant | rs1343143 |
|---|---|
| Chromosome Location | chr1:210985861-210985862 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
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| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr1:210972897..210975038-chr1:210985230..210987192,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:22)
| rs_ID | r2[population] |
|---|---|
| rs1770213 | 0.88[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs1770216 | 0.95[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs1770219 | 0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs1770221 | 0.91[EUR][1000 genomes] |
| rs1770222 | 0.91[EUR][1000 genomes] |
| rs1777243 | 0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs1777245 | 0.91[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs1777246 | 0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs1777258 | 0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs1777260 | 0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs1777261 | 0.84[AMR][1000 genomes] |
| rs1777264 | 0.84[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs1890839 | 0.84[AMR][1000 genomes] |
| rs1890840 | 0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs1934636 | 0.83[AMR][1000 genomes] |
| rs2798147 | 0.83[EUR][1000 genomes] |
| rs4951615 | 0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs4951640 | 0.88[EUR][1000 genomes] |
| rs6658580 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6666042 | 0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs7515909 | 0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs7546472 | 0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv873148 | chr1:210665583-210994339 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh | Chromatin interactive regionlncRNAmiRNA target site | 3 gene(s) | inside rSNPs | diseases |
| 2 | nsv873153 | chr1:210900481-210994339 | Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| 3 | nsv999018 | chr1:210907239-210999306 | Genic enhancers Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| 4 | nsv832503 | chr1:210948760-211103163 | Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer | TF binding regionChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr1:210977600-210993200 | Weak transcription | HSMM | muscle |
