Variant report

Variant	rs1770219
Chromosome Location	chr1:210974049-210974050
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:210972897..210975038-chr1:210985230..210987192,2	K562	blood:

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs11119614	0.81[JPT][hapmap]
rs12078503	0.82[JPT][hapmap]
rs1343143	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1343150	0.81[JPT][hapmap]
rs17016986	0.82[JPT][hapmap]
rs1770213	1.00[CEU][hapmap];0.95[GIH][hapmap];0.90[JPT][hapmap];0.82[MEX][hapmap];0.96[TSI][hapmap];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1770216	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1770221	0.94[CEU][hapmap];0.84[TSI][hapmap];0.84[EUR][1000 genomes]
rs1770222	0.84[EUR][1000 genomes]
rs1777243	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1777245	0.93[CEU][hapmap];0.91[JPT][hapmap];0.95[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1777246	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1777258	0.84[CHB][hapmap];0.91[JPT][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1777260	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1777261	0.91[JPT][hapmap];0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1777264	0.93[CEU][hapmap];0.95[GIH][hapmap];0.90[JPT][hapmap];0.82[MEX][hapmap];0.82[TSI][hapmap];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1890839	0.91[JPT][hapmap];0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1890840	0.82[ASW][hapmap];1.00[CEU][hapmap];0.92[CHB][hapmap];0.89[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];0.88[MKK][hapmap];1.00[TSI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1890845	0.81[JPT][hapmap]
rs1934628	0.90[GIH][hapmap];0.90[JPT][hapmap];0.88[MEX][hapmap]
rs1934629	0.90[GIH][hapmap];0.90[JPT][hapmap];0.94[MEX][hapmap]
rs1934630	0.91[JPT][hapmap];0.82[AMR][1000 genomes]
rs1934636	0.95[GIH][hapmap];0.90[JPT][hapmap];0.94[MEX][hapmap];0.85[MKK][hapmap];0.82[TSI][hapmap];0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2798147	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs2884390	0.81[JPT][hapmap]
rs4405188	0.82[AMR][1000 genomes]
rs4951615	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4951640	0.94[CEU][hapmap];0.84[TSI][hapmap];0.82[EUR][1000 genomes]
rs6658580	0.81[CEU][hapmap];0.91[JPT][hapmap];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6665563	0.81[JPT][hapmap]
rs6666042	0.94[CEU][hapmap];0.91[JPT][hapmap];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7515909	0.94[CEU][hapmap];0.95[GIH][hapmap];0.90[JPT][hapmap];0.88[MEX][hapmap];0.91[TSI][hapmap];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7545932	0.81[JPT][hapmap]
rs7546472	0.88[CEU][hapmap];0.91[GIH][hapmap];0.90[JPT][hapmap];0.82[MEX][hapmap];0.87[TSI][hapmap];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9429846	0.90[JPT][hapmap]
rs9429847	0.84[CHB][hapmap];0.89[JPT][hapmap];0.81[MEX][hapmap];0.82[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv873148	chr1:210665583-210994339	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
2	nsv873153	chr1:210900481-210994339	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv999018	chr1:210907239-210999306	Genic enhancers Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv832503	chr1:210948760-211103163	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:210941800-210978000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr1:210953400-210974400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr1:210965800-210975600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr1:210966800-210976800	Weak transcription	A549	lung
5	chr1:210967000-210979600	Weak transcription	Brain Cingulate Gyrus	brain
6	chr1:210967400-210985000	Weak transcription	Brain Hippocampus Middle	brain
7	chr1:210970800-210975400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr1:210971000-210978800	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr1:210971200-210974200	Weak transcription	HSMM	muscle
10	chr1:210971200-210976200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr1:210973400-210974600	Enhancers	Brain Angular Gyrus	brain
12	chr1:210973400-210975000	Enhancers	Placenta	Placenta
13	chr1:210973600-210974600	Weak transcription	Esophagus	oesophagus
14	chr1:210973800-210975600	Enhancers	Fetal Heart	heart
15	chr1:210974000-210975000	Genic enhancers	HSMMtube	muscle
16	chr1:210974000-210975800	Enhancers	Breast Myoepithelial Primary Cells	Breast

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