Variant report

Variant	rs6666042
Chromosome Location	chr1:210987858-210987859
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs11119614	0.86[JPT][hapmap]
rs11485201	0.80[JPT][hapmap]
rs12078503	0.86[JPT][hapmap]
rs1343143	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1343150	0.86[JPT][hapmap]
rs17016986	0.86[JPT][hapmap]
rs1770213	0.94[CEU][hapmap];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1770216	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1770219	0.94[CEU][hapmap];0.91[JPT][hapmap];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1770221	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs1770222	0.91[EUR][1000 genomes]
rs1777243	0.94[CEU][hapmap];0.93[JPT][hapmap];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1777245	0.87[CEU][hapmap];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1777246	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1777258	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1777260	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1777261	0.84[AMR][1000 genomes]
rs1777264	0.87[CEU][hapmap];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1890839	0.84[AMR][1000 genomes]
rs1890840	0.94[CEU][hapmap];0.93[JPT][hapmap];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1934636	0.83[AMR][1000 genomes]
rs2798147	0.94[CEU][hapmap];0.83[EUR][1000 genomes]
rs4951615	0.94[CEU][hapmap];0.93[JPT][hapmap];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4951640	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs6658580	0.88[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7515909	1.00[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7545932	0.86[JPT][hapmap]
rs7546472	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7553542	0.86[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv873148	chr1:210665583-210994339	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
2	nsv873153	chr1:210900481-210994339	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv999018	chr1:210907239-210999306	Genic enhancers Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv832503	chr1:210948760-211103163	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:210977600-210993200	Weak transcription	HSMM	muscle
2	chr1:210987800-210989400	Weak transcription	Brain Hippocampus Middle	brain

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